Well, after some deep cleaning a few nights ago I found a couple dings around the skyon.
Two on the the right A-piller
A few on the left fender
One above the drivers door on the roof (the transition piece I guess?)

A paint less dent remover came to the shop today and took a look. He said the A-piller since its has the re-reinforcement it and can't be popped out because its a re-reinforced piller. He suggested the hot-glue method but it would melt the vinyl. He said he could do the body shop way and not paint it to match because the vinyl would cover it. He said he would do it all for $400.

I figured maybe I could just de-tape the front A pillers and see what it looks like. That way he can pop them out w/o having to body fill them. I have a couple of pictures that might help, they don't look too good though.